org.broadinstitute.hellbender.tools.walkers.varianteval.util

Class AnalysisModuleScanner

java.lang.Object

org.broadinstitute.hellbender.tools.walkers.varianteval.util.AnalysisModuleScanner

public class AnalysisModuleScanner
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
AnalysisModuleScanner(java.lang.Class<?> cls) create a report scanner from the passed in class
AnalysisModuleScanner(java.lang.Object obj) create a report scanner from the passed in class

Method Summary

Modifier and Type	Method and Description
Analysis	getAnalysis()
java.util.Map<java.lang.reflect.Field,DataPoint>	getData()
java.lang.Class<?>	getModuleClass()
Molten	getMoltenAnnotation()
java.lang.reflect.Field	getMoltenField()
boolean	hasMoltenField()
void	scan() scan the class and find all appropriate fields and tables

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnalysisModuleScanner

public AnalysisModuleScanner(java.lang.Class<?> cls)

create a report scanner from the passed in class

Parameters:

cls - the target class, annotated with the @Analysis annotation

AnalysisModuleScanner

public AnalysisModuleScanner(java.lang.Object obj)

create a report scanner from the passed in class

Parameters:

obj - the target object, annotated with the @Analysis annotation

Method Detail

scan

public void scan()

scan the class and find all appropriate fields and tables

getMoltenField

public java.lang.reflect.Field getMoltenField()

getMoltenAnnotation

public Molten getMoltenAnnotation()

hasMoltenField

public boolean hasMoltenField()

getData

public java.util.Map<java.lang.reflect.Field,DataPoint> getData()

Returns:

a map of the datum annotations found

getAnalysis

public Analysis getAnalysis()

Returns:

the analysis annotation found

getModuleClass

public java.lang.Class<?> getModuleClass()