org.broadinstitute.hellbender.transformers

Class StripMateNumberTransformer

java.lang.Object

org.broadinstitute.hellbender.transformers.StripMateNumberTransformer

All Implemented Interfaces:

java.io.Serializable, java.util.function.Function<GATKRead,GATKRead>, java.util.function.UnaryOperator<GATKRead>, ReadTransformer, SerializableFunction<GATKRead,GATKRead>

public class StripMateNumberTransformer
extends java.lang.Object
implements ReadTransformer

Removes /1 or /2 and any whitespace from the end of the read name if present

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static long	serialVersionUID

Constructor Summary

Constructors

Constructor and Description
StripMateNumberTransformer()

Method Summary

Modifier and Type	Method and Description
GATKRead	apply(GATKRead read)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.broadinstitute.hellbender.transformers.ReadTransformer

andThen, compose, identity

Methods inherited from interface java.util.function.Function

andThen, compose

Field Detail

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

StripMateNumberTransformer

public StripMateNumberTransformer()

Method Detail

apply

public GATKRead apply(GATKRead read)

Specified by:

apply in interface java.util.function.Function<GATKRead,GATKRead>

Specified by:

apply in interface SerializableFunction<GATKRead,GATKRead>