org.broadinstitute.hellbender.utils.codecs.gtf

Enum GencodeGtfFeature.LocusLevel

java.lang.Object

java.lang.Enum<GencodeGtfFeature.LocusLevel>

org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.LocusLevel

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<GencodeGtfFeature.LocusLevel>

Enclosing class:

GencodeGtfFeature

public static enum GencodeGtfFeature.LocusLevel
extends java.lang.Enum<GencodeGtfFeature.LocusLevel>

Status of how a position was annotated / verified: 1 - verified locus 2 - manually annotated locus 3 - automatically annotated locus For more information, see: https://www.gencodegenes.org/data_format.html https://en.wikipedia.org/wiki/General_feature_format

Enum Constant Summary

Enum Constants

Enum Constant and Description
AUTOMATICALLY_ANNOTATED Automatically annotated locus
MANUALLY_ANNOTATED Manually annotated locus
VERIFIED Verified locus

Method Summary

Modifier and Type	Method and Description
static GencodeGtfFeature.LocusLevel	getEnum(java.lang.String s)
java.lang.String	toString()
static GencodeGtfFeature.LocusLevel	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static GencodeGtfFeature.LocusLevel[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

VERIFIED

public static final GencodeGtfFeature.LocusLevel VERIFIED

Verified locus

MANUALLY_ANNOTATED

public static final GencodeGtfFeature.LocusLevel MANUALLY_ANNOTATED

Manually annotated locus

AUTOMATICALLY_ANNOTATED

public static final GencodeGtfFeature.LocusLevel AUTOMATICALLY_ANNOTATED

Automatically annotated locus

Method Detail

values

public static GencodeGtfFeature.LocusLevel[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GencodeGtfFeature.LocusLevel c : GencodeGtfFeature.LocusLevel.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GencodeGtfFeature.LocusLevel valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Enum<GencodeGtfFeature.LocusLevel>

getEnum

public static GencodeGtfFeature.LocusLevel getEnum(java.lang.String s)