Hierarchy For Package org.broadinstitute.hellbender.utils

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • org.broadinstitute.hellbender.utils.GenomeLocSortedSet
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.LinkedHashMap<K,V> (implements java.util.Map<K,V>)
        • org.broadinstitute.hellbender.utils.LRUCache<K,V>
  • org.broadinstitute.hellbender.utils.BaseUtils
  • org.broadinstitute.hellbender.utils.ClassUtils
  • org.broadinstitute.hellbender.utils.CompressedDataList<T> (implements java.lang.Iterable<T>)
  • org.broadinstitute.hellbender.utils.Dirichlet
  • org.broadinstitute.hellbender.utils.FisherExactTest
  • org.broadinstitute.hellbender.utils.GenomeLoc (implements java.lang.Comparable<T>, org.broadinstitute.hellbender.utils.HasGenomeLocation, htsjdk.samtools.util.Locatable, java.io.Serializable)
  • org.broadinstitute.hellbender.utils.GenomeLocParser
  • org.broadinstitute.hellbender.utils.GenotypeCounts
  • org.broadinstitute.hellbender.utils.GenotypeUtils
  • org.broadinstitute.hellbender.utils.Histogram
  • org.broadinstitute.hellbender.utils.IGVUtils
  • org.broadinstitute.hellbender.utils.IndexRange
  • org.broadinstitute.hellbender.utils.IndexUtils
  • org.broadinstitute.hellbender.utils.IntegrationUtils
  • org.broadinstitute.hellbender.utils.IntervalUtils
  • org.broadinstitute.hellbender.utils.IntToDoubleFunctionCache
    • org.broadinstitute.hellbender.utils.DigammaCache
    • org.broadinstitute.hellbender.utils.Log10Cache
    • org.broadinstitute.hellbender.utils.Log10FactorialCache
  • org.broadinstitute.hellbender.utils.KV<K,V>
  • org.broadinstitute.hellbender.utils.LoggingUtils
  • org.broadinstitute.hellbender.utils.MannWhitneyU
  • org.broadinstitute.hellbender.utils.MannWhitneyU.RankedData
  • org.broadinstitute.hellbender.utils.MannWhitneyU.Result
  • org.broadinstitute.hellbender.utils.MannWhitneyU.TestStatistic
  • org.broadinstitute.hellbender.utils.MathUtils
  • org.broadinstitute.hellbender.utils.MathUtils.RunningAverage
  • org.broadinstitute.hellbender.utils.MatrixSummaryUtils
  • org.broadinstitute.hellbender.utils.NativeUtils
  • org.broadinstitute.hellbender.utils.NaturalLogUtils
  • org.broadinstitute.hellbender.utils.Nucleotide.Counter
  • org.broadinstitute.hellbender.utils.OptimizationUtils
  • org.broadinstitute.hellbender.utils.QualityUtils
  • org.broadinstitute.hellbender.utils.SATagBuilder
  • org.broadinstitute.hellbender.utils.SequenceDictionaryUtils
  • org.broadinstitute.hellbender.utils.SimpleInterval (implements htsjdk.samtools.util.Locatable, java.io.Serializable)
  • org.broadinstitute.hellbender.utils.UniqueIDWrapper<A>
  • org.broadinstitute.hellbender.utils.UnsignedTypeUtil
  • org.broadinstitute.hellbender.utils.Utils

Interface Hierarchy

• java.util.function.Function<T,R>
  • org.broadinstitute.hellbender.utils.SerializableFunction<T,R> (also extends java.io.Serializable)
• org.broadinstitute.hellbender.utils.HasGenomeLocation
• org.broadinstitute.hellbender.utils.MathUtils.IntToDoubleArrayFunction
• java.io.Serializable
  • org.broadinstitute.hellbender.utils.SerializableFunction<T,R> (also extends java.util.function.Function<T,R>)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.broadinstitute.hellbender.utils.BaseUtils.BaseSubstitutionType
    • org.broadinstitute.hellbender.utils.IntervalSetRule
    • org.broadinstitute.hellbender.utils.Trilean
    • org.broadinstitute.hellbender.utils.GenomeLocParser.ValidationLevel
    • org.broadinstitute.hellbender.utils.MannWhitneyU.TestType
    • org.broadinstitute.hellbender.utils.SequencerFlowClass
    • org.broadinstitute.hellbender.utils.BaseUtils.Base
    • org.broadinstitute.hellbender.utils.NGSPlatform
    • org.broadinstitute.hellbender.utils.IntervalMergingRule
    • org.broadinstitute.hellbender.utils.SequenceDictionaryUtils.SequenceDictionaryCompatibility
    • org.broadinstitute.hellbender.utils.IntervalUtils.IntervalBreakpointType
    • org.broadinstitute.hellbender.utils.Nucleotide