picard.illumina.parser

Class CbclData

java.lang.Object

picard.illumina.parser.BclData

picard.illumina.parser.CbclData

public class CbclData
extends BclData

This class provides that data structure for cbcls. This includes BCL data as well as PF (pass-filter) data and positional information.

Field Summary

Fields inherited from class picard.illumina.parser.BclData

bases, qualities

Constructor Summary

Constructors

Constructor and Description
CbclData(int[] outputLengths, int tile)

Method Summary

Modifier and Type	Method and Description
AbstractIlluminaPositionFileReader.PositionInfo	getPositionInfo()
int	getTile()
int	getXCoordinate()
int	getYCoordinate()
boolean	isPf()
void	setPositionInfo(AbstractIlluminaPositionFileReader.PositionInfo positionInfo)

Methods inherited from class picard.illumina.parser.BclData

getBases, getQualities

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CbclData

public CbclData(int[] outputLengths,
                int tile)

Method Detail

isPf

public boolean isPf()

getTile

public int getTile()

getPositionInfo

public AbstractIlluminaPositionFileReader.PositionInfo getPositionInfo()

setPositionInfo

public void setPositionInfo(AbstractIlluminaPositionFileReader.PositionInfo positionInfo)

getXCoordinate

public int getXCoordinate()

getYCoordinate

public int getYCoordinate()