org.broadinstitute.hellbender.engine

Interface GATKDataSource<T>

Type Parameters:

T - Type of data in the data source

All Superinterfaces:

java.lang.Iterable<T>

All Known Subinterfaces:

ReadsDataSource, ReferenceDataSource

All Known Implementing Classes:

FeatureDataSource, MultiVariantDataSource, ReadsPathDataSource, ReferenceFileSource, ReferenceMemorySource

public interface GATKDataSource<T>
extends java.lang.Iterable<T>

A GATKDataSource is something that can be iterated over from start to finish and/or queried by genomic interval. It is not necessarily file-based.

Method Summary

Modifier and Type	Method and Description
java.util.Iterator<T>	query(SimpleInterval interval)

Methods inherited from interface java.lang.Iterable

forEach, iterator, spliterator

Method Detail

query

java.util.Iterator<T> query(SimpleInterval interval)