org.broadinstitute.hellbender.engine

Interface MultiplePassReadWalker.GATKReadConsumer

Enclosing class:

MultiplePassReadWalker

Functional Interface:

This is a functional interface and can therefore be used as the assignment target for a lambda expression or method reference.

@FunctionalInterface
public static interface MultiplePassReadWalker.GATKReadConsumer

Implemented by MultiplePassReadWalker-derived tools. Tool implementers should provide an implementation of this FunctionalInterface for each call to MultiplePassReadWalker.forEachRead(GATKReadConsumer). The provided FunctionalInterface will be called once with read processed during the iteration. For more information about the arguments supplied to this method,

See Also:

ReadWalker.apply(GATKRead, ReferenceContext, FeatureContext)

Method Summary

Modifier and Type	Method and Description
void	consume(GATKRead read, ReferenceContext reference, FeatureContext features)

Method Detail

consume

void consume(GATKRead read,
             ReferenceContext reference,
             FeatureContext features)