org.broadinstitute.hellbender.utils

Class BinaryTableWriter<R>

java.lang.Object

org.broadinstitute.hellbender.utils.BinaryTableWriter<R>

Type Parameters:

R - record type.

All Implemented Interfaces:

java.lang.AutoCloseable

public abstract class BinaryTableWriter<R>
extends java.lang.Object
implements java.lang.AutoCloseable

Abstract file writing class for record tables stored in binary format.

Field Summary

Fields

Modifier and Type	Field and Description
protected java.io.DataOutputStream	dataOut

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	BinaryTableWriter(java.io.OutputStream out, java.lang.String path)

Method Summary

Modifier and Type	Method and Description
void	close()
void	flush()
java.lang.String	getPath()
long	numberOfRecords()
long	offset()
void	write(R record)
void	writeAll(java.lang.Iterable<? extends R> records)
protected abstract void	writeRecord(R record, java.io.DataOutput output)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dataOut

protected final java.io.DataOutputStream dataOut

Constructor Detail

BinaryTableWriter

protected BinaryTableWriter(java.io.OutputStream out,
                            java.lang.String path)

Method Detail

offset

public long offset()

getPath

public java.lang.String getPath()

writeRecord

protected abstract void writeRecord(R record,
                                    java.io.DataOutput output)
                             throws java.io.IOException

Throws:

java.io.IOException

write

public void write(R record)
           throws java.io.IOException

Throws:

java.io.IOException

writeAll

public void writeAll(java.lang.Iterable<? extends R> records)
              throws java.io.IOException

Throws:

java.io.IOException

close

public void close()
           throws java.io.IOException

Specified by:

close in interface java.lang.AutoCloseable

Throws:

java.io.IOException

flush

public void flush()
           throws java.io.IOException

Throws:

java.io.IOException

numberOfRecords

public long numberOfRecords()