IntervalPileup.Element (gatk 4.2.0.0 API)

public static interface IntervalPileup.Element

All Methods Instance Methods Abstract Methods Default Methods
Modifier and Type	Method and Description
`byte`	`baseAt(int column)`
`int`	`copyInsertBases(int column, byte[] dest, int offset, int length)`
`int`	`copyInsertQuals(int column, byte[] dest, int offset, int maxLength)`
`boolean`	`hasInsertAt(int column)`
`IntervalPileup.Insert`	`insertAt(int column)`
`byte[]`	`insertBasesAt(int column)`
`byte[]`	`insertQualsAt(int column)`
`java.util.List<IntervalPileup.Insert>`	`inserts()`
`default java.util.List<IntervalPileup.Insert>`	`inserts(int firstColumn, int lastColumn)`
`int`	`insertSize(int column)`
`int`	`maxColumn()`
`int`	`minColumn()`
`byte`	`qualAt(int column)`
`GATKRead`	`read()`
`int`	`row()`

IntervalPileup.Insert insertAt(int column)

java.util.List<IntervalPileup.Insert> inserts()

default java.util.List<IntervalPileup.Insert> inserts(int firstColumn,
                                                      int lastColumn)

int copyInsertBases(int column,
                    byte[] dest,
                    int offset,
                    int length)

int copyInsertQuals(int column,
                    byte[] dest,
                    int offset,
                    int maxLength)

Interface IntervalPileup.Element