Hierarchy For Package org.broadinstitute.hellbender.utils.codecs.gtf

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • htsjdk.tribble.AbstractFeatureCodec<FEATURE_TYPE,SOURCE> (implements htsjdk.tribble.FeatureCodec<FEATURE_TYPE,SOURCE>)
    • org.broadinstitute.hellbender.utils.codecs.gtf.AbstractGtfCodec
      • org.broadinstitute.hellbender.utils.codecs.gtf.EnsemblGtfCodec
      • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfCodec
  • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature (implements java.lang.Comparable<T>, htsjdk.tribble.Feature)
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfCDSFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfExonFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfGeneFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfSelenocysteineFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfStartCodonFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfStopCodonFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfTranscriptFeature
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfUTRFeature
  • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.OptionalField<T>
  • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeatureBaseData

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.AnnotationSource
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.FeatureType
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.GeneTranscriptStatus
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.TranscriptSupportLevel
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.RemapStatus
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.RemapTargetStatus
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.GenomicPhase
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.FeatureTag
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.LocusLevel
    • org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.GeneTranscriptType