org.broadinstitute.hellbender.utils.report

Enum GATKReportVersion

java.lang.Object

java.lang.Enum<GATKReportVersion>

org.broadinstitute.hellbender.utils.report.GATKReportVersion

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<GATKReportVersion>

public enum GATKReportVersion
extends java.lang.Enum<GATKReportVersion>

Enum Constant Summary

Enum Constants

Enum Constant and Description
V0_1 Differences between other versions: - Does not allow spaces in cells.
V0_2 Differences between other versions: - Spaces allowed in cells, for example in sample names with spaces in them ex: "C507/FG-CR 6".
V1_0
V1_1

Method Summary

Modifier and Type	Method and Description
boolean	equals(GATKReportVersion that)
static GATKReportVersion	fromHeader(java.lang.String header) Returns the GATK Report Version from the file header.
java.lang.String	toString()
static GATKReportVersion	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static GATKReportVersion[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

V0_1

public static final GATKReportVersion V0_1

Differences between other versions: - Does not allow spaces in cells. - Mostly fixed width but has a bug where the string width of floating point values was not measured correctly leading to columns that aren't aligned

V0_2

public static final GATKReportVersion V0_2

Differences between other versions: - Spaces allowed in cells, for example in sample names with spaces in them ex: "C507/FG-CR 6". - Fixed width fixed for floating point values

V1_0

public static final GATKReportVersion V1_0

V1_1

public static final GATKReportVersion V1_1

Method Detail

values

public static GATKReportVersion[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GATKReportVersion c : GATKReportVersion.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GATKReportVersion valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Enum<GATKReportVersion>

equals

public boolean equals(GATKReportVersion that)

fromHeader

public static GATKReportVersion fromHeader(java.lang.String header)

Returns the GATK Report Version from the file header.

Parameters:

header - Header from the file starting with ##:GATKReport.v[version]

Returns:

The version as an enum.