org.broadinstitute.hellbender.metrics

Class QualityYieldMetricsArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.metrics.MetricsArgumentCollection

org.broadinstitute.hellbender.metrics.QualityYieldMetricsArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public class QualityYieldMetricsArgumentCollection
extends MetricsArgumentCollection
implements java.io.Serializable

MetricsArgumentCollection argument collection for QualityYield metrics. All members should be instantiable as command line arguments.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static long	serialVersionUID
boolean	useOriginalQualities

Fields inherited from class org.broadinstitute.hellbender.metrics.MetricsArgumentCollection

output

Constructor Summary

Constructors

Constructor and Description
QualityYieldMetricsArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

useOriginalQualities

@Argument(doc="If available in the OQ tag, use the original quality scores as inputs instead of the quality scores in the QUAL field.",
          shortName="OQ",
          fullName="use-original-qualities")
public boolean useOriginalQualities

Constructor Detail

QualityYieldMetricsArgumentCollection

public QualityYieldMetricsArgumentCollection()