org.broadinstitute.hellbender.tools.copynumber.gcnv

Class GermlineCNVNamingConstants

java.lang.Object

org.broadinstitute.hellbender.tools.copynumber.gcnv.GermlineCNVNamingConstants

public final class GermlineCNVNamingConstants
extends java.lang.Object

This class stores naming standards in the GermlineCNVCaller. These constants are also defined in python gcnvkernel package.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	BASELINE_COPY_NUMBER_FILE_NAME
static java.lang.String	BASELINE_COPY_NUMBER_TABLE_COLUMN
static java.lang.String	COPY_NUMBER_POSTERIOR_FILE_NAME
static java.lang.String	COPY_NUMBER_SEGMENTS_FILE_NAME
static java.lang.String	COPY_NUMBER_TABLE_COLUMN_PREFIX
static java.lang.String	DEFAULT_GCNV_OUTPUT_COLUMN_PREFIX
static java.lang.String	DENOISED_COPY_RATIO_MEAN_FILE_NAME
static java.lang.String	INTERVAL_LIST_FILE_NAME
static java.lang.String	SAMPLE_NAME_TXT_FILE
static java.lang.String	SAMPLE_PREFIX

Constructor Summary

Constructors

Constructor and Description
GermlineCNVNamingConstants()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COPY_NUMBER_POSTERIOR_FILE_NAME

public static final java.lang.String COPY_NUMBER_POSTERIOR_FILE_NAME

See Also:

Constant Field Values

COPY_NUMBER_SEGMENTS_FILE_NAME

public static final java.lang.String COPY_NUMBER_SEGMENTS_FILE_NAME

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Constant Field Values

BASELINE_COPY_NUMBER_FILE_NAME

public static final java.lang.String BASELINE_COPY_NUMBER_FILE_NAME

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Constant Field Values

SAMPLE_NAME_TXT_FILE

public static final java.lang.String SAMPLE_NAME_TXT_FILE

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Constant Field Values

COPY_NUMBER_TABLE_COLUMN_PREFIX

public static final java.lang.String COPY_NUMBER_TABLE_COLUMN_PREFIX

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Constant Field Values

BASELINE_COPY_NUMBER_TABLE_COLUMN

public static final java.lang.String BASELINE_COPY_NUMBER_TABLE_COLUMN

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Constant Field Values

SAMPLE_PREFIX

public static final java.lang.String SAMPLE_PREFIX

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Constant Field Values

INTERVAL_LIST_FILE_NAME

public static final java.lang.String INTERVAL_LIST_FILE_NAME

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Constant Field Values

DENOISED_COPY_RATIO_MEAN_FILE_NAME

public static final java.lang.String DENOISED_COPY_RATIO_MEAN_FILE_NAME

See Also:

Constant Field Values

DEFAULT_GCNV_OUTPUT_COLUMN_PREFIX

public static final java.lang.String DEFAULT_GCNV_OUTPUT_COLUMN_PREFIX

See Also:

Constant Field Values

Constructor Detail

GermlineCNVNamingConstants

public GermlineCNVNamingConstants()