org.broadinstitute.hellbender.tools.sv

Class BafEvidence

java.lang.Object

org.broadinstitute.hellbender.tools.sv.BafEvidence

All Implemented Interfaces:

htsjdk.samtools.util.Locatable, htsjdk.tribble.Feature

public final class BafEvidence
extends java.lang.Object
implements htsjdk.tribble.Feature

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	BCI_VERSION

Constructor Summary

Constructors

Constructor and Description
BafEvidence(java.lang.String sample, java.lang.String contig, int position, double value)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
java.lang.String	getContig()
int	getEnd()
java.lang.String	getSample()
int	getStart()
double	getValue()
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.tribble.Feature

getChr

Methods inherited from interface htsjdk.samtools.util.Locatable

contains, contigsMatch, getLengthOnReference, overlaps, withinDistanceOf

Field Detail

BCI_VERSION

public static final java.lang.String BCI_VERSION

See Also:

Constant Field Values

Constructor Detail

BafEvidence

public BafEvidence(java.lang.String sample,
                   java.lang.String contig,
                   int position,
                   double value)

Method Detail

getSample

public java.lang.String getSample()

getContig

public java.lang.String getContig()

Specified by:

getContig in interface htsjdk.samtools.util.Locatable

getStart

public int getStart()

Specified by:

getStart in interface htsjdk.samtools.util.Locatable

getEnd

public int getEnd()

Specified by:

getEnd in interface htsjdk.samtools.util.Locatable

getValue

public double getValue()

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object