| Interface | Description |
|---|---|
| PairHMMInputScoreImputation | |
| PairHMMInputScoreImputator |
Common interface for pair-hmm score calculators.
|
| Class | Description |
|---|---|
| DragstrReadSTRAnalyzer |
Utility to find short-tandem-repeats on read sequences.
|
| Log10PairHMM |
Util class for performing the pair HMM for global alignment.
|
| LoglessPairHMM | |
| PairHMM |
Class for performing the pair HMM for global alignment.
|
| PairHMMModel |
Helper class that implement calculations required to implement the PairHMM Finite State Automation (FSA) model.
|
| VectorLoglessPairHMM |
Class for performing the pair HMM for global alignment using AVX instructions contained in a native shared library.
|
| Enum | Description |
|---|---|
| PairHMM.Implementation | |
| VectorLoglessPairHMM.Implementation |
Type for implementation of VectorLoglessPairHMM
|