Package org.broadinstitute.hellbender.cmdline

Class DeprecatedToolsRegistry

java.lang.Object

org.broadinstitute.hellbender.cmdline.DeprecatedToolsRegistry

public class DeprecatedToolsRegistry
extends Object

When a tool is removed from GATK (after having been tagged with @DeprecatedFeature for a suitable period), an entry should be added to this list to issue a message when the user tries to run that tool. NOTE: Picard tools should be listed here as well, since by definition such tools will not be found in the Picard jar.

Constructor Summary

Constructors

Constructor	Description
DeprecatedToolsRegistry()

Method Summary

Modifier and Type	Method	Description
static String	getToolDeprecationInfo(String toolName)	Utility method to pull up the version number at which a tool was deprecated and the suggested replacement, if any

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DeprecatedToolsRegistry

public DeprecatedToolsRegistry()

Method Details

getToolDeprecationInfo

public static String getToolDeprecationInfo(String toolName)

Utility method to pull up the version number at which a tool was deprecated and the suggested replacement, if any

Parameters:

toolName - the tool class name (not the full package) to check