Package org.broadinstitute.hellbender.cmdline.argumentcollections

Class RequiredFeatureInputArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredFeatureInputArgumentCollection

All Implemented Interfaces:

Serializable

public final class RequiredFeatureInputArgumentCollection
extends Object
implements Serializable

An argument collection for use with tools that accept one or more input files containing Feature records (eg., BED files, hapmap files, etc.), and require at least one such input. For variant inputs, tools should typically use one of the VariantInputArgumentCollections instead.

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
List<FeatureInput<htsjdk.tribble.Feature>>	featureFiles

Constructor Summary

Constructors

Constructor	Description
RequiredFeatureInputArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

featureFiles

@Argument(fullName="feature",
          shortName="F",
          doc="File containing features",
          optional=false)
public List<FeatureInput<htsjdk.tribble.Feature>> featureFiles

Constructor Details

RequiredFeatureInputArgumentCollection

public RequiredFeatureInputArgumentCollection()