Package org.broadinstitute.hellbender.engine.filters.flow

package org.broadinstitute.hellbender.engine.filters.flow

Related Packages

Package	Description
org.broadinstitute.hellbender.engine.filters

Classes

Class	Description
FlowBasedHmerBasedReadFilterHelper	A common base class for flow based filters which test for conditions on an hmer basis
FlowBasedTPAttributeSymetricReadFilter	A read filter to test if the TP values for each hmer in a flow based read form a polindrome (as they should)
FlowBasedTPAttributeValidReadFilter	A read filter to test if the TP values for each hmer in a flow based read form are wihin the allowed range (being the possible lengths of hmers - maxHmer)
HmerQualitySymetricReadFilter	A read filter to test if the quality values for each hmer in a flow based read form a polindrome (as they should)
ReadGroupHasFlowOrderReadFilter	A read filter to test if the read's readGroup has a flow order associated with it
WellformedFlowBasedReadFilter	Tests whether a flow based read is "well-formed" -- that is, is free of major internal inconsistencies and issues that could lead to errors downstream.