Package org.broadinstitute.hellbender.tools.examples
package org.broadinstitute.hellbender.tools.examples
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ClassesClassDescriptionExample/toy program that shows how to implement the AssemblyRegionWalker interface.Example/toy program that shows how to implement the AssemblyRegionWalker interface.Example/toy program that shows how to implement the FeatureWalker interface.Example/toy program that shows how to implement the IntervalWalker interface.Example/toy program that shows how to implement the IntervalWalker interface.Example/toy program that shows how to implement the LocusWalker interface.Example/toy program that shows how to implement the LocusWalker interface.Example subclass that shows how to use the MultiFeatureWalker class.Example/toy program that prints reads from the provided file or files with corresponding reference bases (if a reference is provided).Example/toy ReadWalker program that uses a Python script.Example/toy program that prints reads from the provided file or files with corresponding reference bases (if a reference is provided).Example/toy program that prints reads from the provided file or files with corresponding reference bases (if a reference is provided).Example/toy program that prints reads from the provided file or files along with overlapping variants (if a source of variants is provided).Example/toy program that prints reads from the provided file or files along with overlapping variants (if a source of variants is provided).Counts the number of times each reference context is seen as well as how many times it's overlapped by reads and variants.Example ReadWalker program that uses a Python streaming executor to stream summary data from a BAM input file to a Python process through an asynchronous stream writer.This walker makes two traversals through variants in a vcf.Example/toy program that shows how to implement the VariantWalker interface.Example/toy program that shows how to implement the VariantWalker interface.