Package org.broadinstitute.hellbender.tools.reference
package org.broadinstitute.hellbender.tools.reference
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ClassDescriptionCheck a BAM/VCF for compatibility against specified references.TableWriter to format and write the table output.Display reference comparison as a tab-delimited table and summarize reference differences.TableWriter to format and write the table output.TableWriter to format and write SNP table output.Class representing a pair of references and their differences.Table utilized by CompareReferences tool to compare and analyze sequences found in specified references.