Package org.broadinstitute.hellbender.tools.spark
package org.broadinstitute.hellbender.tools.spark
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ClassDescriptionApply base quality score recalibration with Spark.Spark version of the first pass of the base quality score recalibration.Create a Hadoop BAM splitting index and optionally a BAM index from a BAM file.Parallel copy a file or directory from Google Cloud Storage into the HDFS file system used by SparkPrints read alignments in
samtoolspileup format.Reverts a SAM file by optionally restoring original quality scores and by removing all alignment information.