Package org.broadinstitute.hellbender.tools.spark.sv.discovery

Class SvDiscoveryInputMetaData.ReferenceData

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.discovery.SvDiscoveryInputMetaData.ReferenceData

Enclosing class:

SvDiscoveryInputMetaData

public static final class SvDiscoveryInputMetaData.ReferenceData
extends Object

Method Summary

Modifier and Type	Method	Description
org.apache.spark.broadcast.Broadcast<Set<String>>	getCanonicalChromosomesBroadcast()
org.apache.spark.broadcast.Broadcast<ReferenceMultiSparkSource>	getReferenceBroadcast()
org.apache.spark.broadcast.Broadcast<htsjdk.samtools.SAMSequenceDictionary>	getReferenceSequenceDictionaryBroadcast()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

getCanonicalChromosomesBroadcast

public org.apache.spark.broadcast.Broadcast<Set<String>> getCanonicalChromosomesBroadcast()

getReferenceBroadcast

public org.apache.spark.broadcast.Broadcast<ReferenceMultiSparkSource> getReferenceBroadcast()

getReferenceSequenceDictionaryBroadcast

public org.apache.spark.broadcast.Broadcast<htsjdk.samtools.SAMSequenceDictionary> getReferenceSequenceDictionaryBroadcast()