Package org.broadinstitute.hellbender.tools.spark.sv.discovery

Class SvDiscoveryUtils

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.discovery.SvDiscoveryUtils

public final class SvDiscoveryUtils
extends Object

Constructor Summary

Constructors

Constructor	Description
SvDiscoveryUtils()

Method Summary

Modifier and Type	Method	Description
static void	evaluateIntervalsAndNarls(List<SVInterval> assembledIntervals, List<NovelAdjacencyAndAltHaplotype> narls, htsjdk.samtools.SAMSequenceDictionary referenceSequenceDictionary, StructuralVariationDiscoveryArgumentCollection.DiscoverVariantsFromContigAlignmentsArgumentCollection parameters, org.apache.logging.log4j.Logger toolLogger)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SvDiscoveryUtils

public SvDiscoveryUtils()

Method Details

evaluateIntervalsAndNarls

public static void evaluateIntervalsAndNarls(List<SVInterval> assembledIntervals,
 List<NovelAdjacencyAndAltHaplotype> narls,
 htsjdk.samtools.SAMSequenceDictionary referenceSequenceDictionary,
 StructuralVariationDiscoveryArgumentCollection.DiscoverVariantsFromContigAlignmentsArgumentCollection parameters,
 org.apache.logging.log4j.Logger toolLogger)