Package org.broadinstitute.hellbender.tools.walkers.contamination
package org.broadinstitute.hellbender.tools.walkers.contamination
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ClassesClassDescriptionCalculates the fraction of reads coming from cross-sample contamination, given results from
GetPileupSummaries.This is the probabilistic contamination model that we use to distinguish homs from hets The model is similar to that of ContEst, in that it assumes that each contaminant read is independently drawn from the population.Created by David Benjamin on 2/13/17.Summarizes counts of reads that support reference, alternate and other alleles for given sites.Created by David Benjamin on 2/13/17.Created by David Benjamin on 2/14/17.