Package org.broadinstitute.hellbender.tools.walkers.haplotypecaller.readthreading
package org.broadinstitute.hellbender.tools.walkers.haplotypecaller.readthreading
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ClassDescriptionRead threading graph class intended to contain duplicated code between
ReadThreadingGraphandJunctionTreeLinkedDeBruijnGraph.Edge factory that encapsulates the numPruningSamples assembly parameterExperimental version of the ReadThreadingGraph with support for threading reads to generate JunctionTrees for resolving connectivity information at longer ranges.A DeBruijnVertex that supports multiple copies of the same kmerNote: not final but only intended to be subclassed for testing.