Package org.broadinstitute.hellbender.tools.walkers.readorientation
package org.broadinstitute.hellbender.tools.walkers.readorientation
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ClassDescriptionCreated by tsato on 10/11/17.WriterContainer for the artifact prior probabilities for the read orientation modelContainer class for
ArtifactPriorobjects.This enum encapsulates the domain of the discrete latent random variable zAt each genomic locus, count the number of F1R2/F2R1 alt reads.Holds histograms of alt depth=1 sites for reference contexts.Created by tsato on 3/14/18.Learn the prior probability of read orientation artifact from the output ofCollectF1R2CountsofMutect2Details of the model may be found in docs/mutect/mutect.pdf.Created by tsato on 3/28/18.