Package org.broadinstitute.hellbender.tools.walkers.rnaseq
package org.broadinstitute.hellbender.tools.walkers.rnaseq
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ClassDescriptionCalculate read counts per allele for allele-specific expression analysis of RNAseq dataEvaluate gene expression from RNA-seq reads aligned to genome.The class manages reads and splices and tries to apply overhang clipping when appropriate.Splits reads that contain Ns in their cigar string (e.g.