Package org.broadinstitute.hellbender.tools.walkers.varianteval
package org.broadinstitute.hellbender.tools.walkers.varianteval
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ClassDescriptionThis tool uses VariantEval to bin variants in Thousand Genomes by allele frequency.Given a variant callset, it is common to calculate various quality control metrics.The collection of arguments for VariantEvalThis class allows other classes to replicate the behavior of VariantEval Usage: -Pass the genotype args into the constructor, which will the initialize the engine completelyClass for writing the GATKReport for VariantEval Accepts a fulled evaluated (i.e., there's no more data coming) set of stratifications and evaluators and supports writing out the data in these evaluators to a GATKReport.