Package org.broadinstitute.hellbender.tools.walkers.variantrecalling
package org.broadinstitute.hellbender.tools.walkers.variantrecalling
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ClassesClassDescriptionCalculate likelihood matrix for each Allele in VCF against a set of Reads limited by a set of HaplotypesSet of arguments for the
HaplotypeBasedVariantRecallera service class for HaplotypeBasedVariableRecaller that reads a SAM/BAM file, interprets the reads as haplotypes and called a provided consumer with the 'best' haplotypes found for a given query location.a service class for HaplotypeBasedVariableRecaller that reads SAM/BAM files.