Package org.broadinstitute.hellbender.utils.dragstr

package org.broadinstitute.hellbender.utils.dragstr

Related Packages

Package	Description
org.broadinstitute.hellbender.utils

Classes

Class	Description
DoubleSequence	User argument to specify a sequence of doubles with 3 values in the format "start:step:limit".
DragstrParams	Holds the values of the DRAGstr model parameters for different combinations of repeat unit length (period) and number of repeat units.
DragstrParamsBuilder	Partial mutable collection of Dragstr Parameters used to compose the final immutable DragstrParams.
DragstrParamUtils	Utils to read and write DragstrParams instances from an to files and other resources.
DragstrReferenceAnalyzer	Tool to figure out the period and repeat-length (in units) of STRs in a reference sequence.
STRTableFile	Class to create and access STR table file contents.
STRTableFileBuilder	Utility class to compose the contents of the STR Table file.