Package org.broadinstitute.hellbender.utils.pairhmm

package org.broadinstitute.hellbender.utils.pairhmm

Related Packages

Package	Description
org.broadinstitute.hellbender.utils

Class	Description
DragstrReadSTRAnalyzer	Utility to find short-tandem-repeats on read sequences.
FlowBasedPairHMM	Class for performing the pair HMM for global alignment in FlowSpace.
Log10PairHMM	Util class for performing the pair HMM for global alignment.
LoglessPairHMM
PairHMM	Class for performing the pair HMM for global alignment.
PairHMM.Implementation
PairHMMInputScoreImputation
PairHMMInputScoreImputator	Common interface for pair-hmm score calculators.
PairHMMModel	Helper class that implement calculations required to implement the PairHMM Finite State Automation (FSA) model.
VectorLoglessPairHMM	Class for performing the pair HMM for global alignment using AVX instructions contained in a native shared library.
VectorLoglessPairHMM.Implementation	Type for implementation of VectorLoglessPairHMM