Package org.broadinstitute.hellbender.utils.read.markduplicates.sparkrecords
package org.broadinstitute.hellbender.utils.read.markduplicates.sparkrecords
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ClassDescriptionDummy class representing a mated read fragment at a particular start position to be used for accounting when deciding whether to duplicate unmatched fragments.Class representing a single read fragment at a particular start location without a mapped mate.Class representing a single read fragment at a particular start location without a mapped mate.A common interface for the data types that represent reads for mark duplicates spark.Class representing a pair of reads together with accompanying optical duplicate marking information.Serializers for each subclass of PairedEnds which rely on implementations of serializations within each class itselfStruct-like class to store information about the paired reads for mark duplicates.Dummy class used for preserving reads that need to be marked as non-duplicate despite not wanting to perform any processing on the reads.A common class for holding the fields in PhysicalLocation that we don't want to be serialized by kryo.