Package org.broadinstitute.hellbender.utils.recalibration
package org.broadinstitute.hellbender.utils.recalibration
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ClassDescriptionReference window function for BQSR.A general algorithm for quantizing quality score distributions to use a specific number of levels Takes a histogram of quality scores and a desired number of levels and produces a map from original quality scores -> quantized quality scores.Class that encapsulates the information necessary for quality score quantization for BQSRAn individual piece of recalibration data.A collection of the arguments that are used for BQSR.This class has all the static functionality for reading a recalibration report file into memory.Utility class to facilitate base quality score recalibration.This helper class holds the data HashMap as well as submaps that represent the marginal distributions collapsed over all needed dimensions.