Package org.broadinstitute.hellbender.utils.spark

package org.broadinstitute.hellbender.utils.spark
  • Classes
    Class
    Description
    JoinReadsWithVariants
    Joins an RDD of GATKReads to variant data by copying the variants files to every node, using Spark's file copying mechanism.
    SparkConverter
    Class with helper methods to convert objects (mostly matrices) to/from Spark (particularly, in MLLib)
    SparkUtils
    Miscellaneous Spark-related utilities