Package picard.fastq

package picard.fastq
  • Class
    Description
    BamToBfq
    Converts a BAM file into a BFQ (binary fastq formatted) file.
    BamToBfqWriter
    Deprecated.
    Casava18ReadNameEncoder
    A read name encoder conforming to the standard described by Illumina Casava 1.8.
    IlluminaReadNameEncoder
    A read name encoder following the encoding initially produced by picard fastq writers.
    ReadNameEncoder
     
    SamToBfqWriter
    Class to take unmapped reads in SAM/BAM/CRAM file format and create Maq binary fastq format file(s) -- one or two of them, depending on whether it's a paired-end read.