Package picard.filter
package picard.filter
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ClassesClassDescriptionCounting filter that discards reads are unaligned or aligned with MQ==0 and whose 5' ends look like adapter SequenceCounting filter that discards reads that have been marked as duplicates.A SamRecordFilter that counts the number of bases in the reads which it filters out.Counting filter that discards reads below a configurable mapping quality threshold.Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.