Package picard.illumina

Class LanePhasingMetricsCollector

java.lang.Object

picard.illumina.LanePhasingMetricsCollector

public class LanePhasingMetricsCollector
extends Object

Helper class used to transform tile data for a lane into a collection of IlluminaPhasingMetrics

Constructor Summary

Constructors

Constructor	Description
LanePhasingMetricsCollector(Collection<Tile> laneTiles, boolean usePercentage)	Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads

Method Summary

Modifier and Type	Method	Description
Map<TileTemplateRead,Float>	getMedianPhasingMap()
Map<TileTemplateRead,Float>	getMedianPrePhasingMap()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LanePhasingMetricsCollector

public LanePhasingMetricsCollector(Collection<Tile> laneTiles,
 boolean usePercentage)

Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads

Method Details

getMedianPhasingMap

public Map<TileTemplateRead,Float> getMedianPhasingMap()

getMedianPrePhasingMap

public Map<TileTemplateRead,Float> getMedianPrePhasingMap()