Package picard.sam.SamErrorMetric

Class BaseErrorCalculator

java.lang.Object

picard.sam.SamErrorMetric.BaseErrorCalculator

All Implemented Interfaces:

BaseCalculator

Direct Known Subclasses:

IndelErrorCalculator, OverlappingReadsErrorCalculator, SimpleErrorCalculator

public abstract class BaseErrorCalculator
extends Object
implements BaseCalculator

Constructor Summary

Constructors

Constructor	Description
BaseErrorCalculator()

Method Summary

Modifier and Type	Method	Description
void	addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)	the function by which new loci are "shown" to the calculator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface picard.sam.SamErrorMetric.BaseCalculator

getMetric, getSuffix

Constructor Details

BaseErrorCalculator

public BaseErrorCalculator()

Method Details

addBase

public void addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
 htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)

the function by which new loci are "shown" to the calculator

Specified by:

addBase in interface BaseCalculator