Package picard.vcf.processor

package picard.vcf.processor

Related Packages

Package	Description
picard.vcf
picard.vcf.processor.util
picard.vcf.filter
picard.vcf.MendelianViolations

Class	Description
VariantAccumulatorExecutor<ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>,RESULT>	Describes the functionality for an executor that manages the delegation of work to VariantProcessor.Accumulators.
VariantAccumulatorExecutor.MultiThreadedChunkBased<A extends VariantProcessor.Accumulator<R>,R>	A VariantAccumulatorExecutor that breaks down work into chunks described by the provided VariantIteratorProducer and spreads them over the indicated number of threads.
VariantIteratorProducer	A mechanism for iterating over CloseableIterator of VariantContexts in in some fashion, given VCF files and optionally an interval list.
VariantProcessor<RESULT,ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>>	Describes an object that processes variants and produces a result.
VariantProcessor.Accumulator<RESULT>	Handles VariantContexts, and accumulates their data in some fashion internally.
VariantProcessor.AccumulatorGenerator<ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>,RESULT>	Generates instances of VariantProcessor.Accumulators.
VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>,R>	Simple builder of VariantProcessors.
VariantProcessor.ResultMerger<RESULT>	Takes a collection of results produced by VariantProcessor.Accumulator.result() and merges them into a single RESULT.
VcfFileSegment	Deprecated. from 2022-03-17, Use VcfPathSegment
VcfFileSegmentGenerator	Deprecated. from 2022-03-17, Use VcfPathSegmentGenerator
VcfPathSegment	Describes a segment of a particular VCF file.
VcfPathSegmentGenerator	Describes a mechanism for producing VcfPathSegments from a VCF file path.