OntologyMapper

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def clone(): AnyRef

   

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   protected[java.lang]

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6. lazy val config: Config

   

   Definition Classes

   EidosConfigured

7. def contains(argPath: String): Boolean

   

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   Configured

8. def eidosGrounders(reader: EidosSystem): Seq[EidosOntologyGrounder]

   

9. final def eq(arg0: AnyRef): Boolean

   

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   AnyRef

10. def equals(arg0: Any): Boolean

    

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11. def expandedConcept(path: String): Seq[String]

    

12. def finalize(): Unit

    

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13. def getArgBoolean(argPath: String, defaultValue: Option[Boolean]): Boolean

    

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    Configured

14. def getArgFloat(argPath: String, defaultValue: Option[Float]): Float

    

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    Configured

15. def getArgInt(argPath: String, defaultValue: Option[Int]): Int

    

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    Configured

16. def getArgString(argPath: String, defaultValue: Option[String]): String

    

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    Configured

17. def getArgStrings(argPath: String, defaultValue: Option[Seq[String]]): Seq[String]

    

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    Configured

18. final def getClass(): Class[_]

    

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19. def getConf: Config

    

    Definition Classes

    EidosConfigured → Configured

20. def getParents(path: String): Seq[String]

    

21. def hashCode(): Int

    

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    AnyRef → Any

22. final def isInstanceOf[T0]: Boolean

    

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    Any

23. def loadOtherOntology(file: String, w2v: EidosWordToVec): Seq[ConceptEmbedding]

    

24. def mapIndicators(reader: EidosSystem, outputFile: String, topN: Int): Unit

    

25. def mapIndicators(reader: EidosSystem): Unit

    

26. def mapOntologies(reader: EidosSystem, sofiaPath: String, providedOntology: Option[String], providedOntName: String = "ProvidedOntology", exampleWeight: Float = 0.8f, parentWeight: Float = 0.1f, topN: Int = 0): String

    

    Generates the mappings between the reader ontologies in a String format

    Generates the mappings between the reader ontologies in a String format

    reader

    EidosSystem

    sofiaPath

    path to the Sofia ontology file

    providedOntology

    a YAML string representing the ontology against which mappings are generated

    providedOntName

    name of the ontology provided in the providedOntology argument

    exampleWeight

    the weight for the similarity of the pair of nodes (default = 0.8)

    parentWeight

    the weight for the similarity of the node parents (default = 0.1)

    topN

    the number of similarity scores to return, when set to 0, return them all (default = 0)

    returns

    String version of the mapping, akin to a file, newlines separate the "rows"

27. def mostSimilar(concept: ConceptEmbedding, indicators: Seq[ConceptEmbedding], n: Int, reader: EidosSystem, exampleWeight: Float = 0.8f, parentWeight: Float = 0.1f): Seq[(String, Float)]

    

28. def mostSimilarIndicators(concepts: Seq[ConceptEmbedding], indicators: Seq[ConceptEmbedding], n: Int = 10, reader: EidosSystem, exampleWeight: Float = 0.8f, parentWeight: Float = 0.1f): Seq[(String, Seq[(String, Float)])]

    

29. def mweStringSimilarity(a: String, b: String, reader: EidosSystem): Float

    

30. final def ne(arg0: AnyRef): Boolean

    

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31. final def notify(): Unit

    

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32. final def notifyAll(): Unit

    

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33. def pairwiseScore(ce1: ConceptEmbedding, ce2: ConceptEmbedding, reader: EidosSystem, exampleWeight: Float, parentWeight: Float): Float

    

34. def replaceSofiaAbbrev(str: String): String

    

35. val sanitizer: DefaultWordSanitizer

    

36. def selectWords(ws: Seq[String], contentOnly: Boolean, proc: EidosProcessor): Seq[String]

    

37. final def synchronized[T0](arg0: ⇒ T0): T0

    

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38. def toString(): String

    

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39. final def wait(): Unit

    

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40. final def wait(arg0: Long, arg1: Int): Unit

    

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41. final def wait(arg0: Long): Unit

    

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42. def weightedNodeToParentScore(conceptPath: String, indicatorPath: String, reader: EidosSystem): Double

    

43. def weightedParentScore(path1: String, path2: String, reader: EidosSystem): Float