AssemblyExporter

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val ACTIVATION: String

   

5. val CELLULAR_COMPONENT: String

   

6. val CELL_LINE: String

   

7. val CELL_TYPE: String

   

8. val CONCAT: String

   

9. val CONTEXT_CELLULAR_COMPONENT: String

   

10. val CONTEXT_CELL_LINE: String

    

11. val CONTEXT_CELL_TYPE: String

    

12. val CONTEXT_ORGAN: String

    

13. val CONTEXT_SPECIES: String

    

14. val CONTEXT_TISSUE_TYPE: String

    

15. val CONTROLLER: String

    

16. val DEFAULT_COLUMNS: Seq[String]

    

17. val ENTITY: String

    

18. val EVENT_ID: String

    

19. val EVENT_LABEL: String

    

20. val EVIDENCE: String

    

21. val INDIRECT: String

    

22. val INPUT: String

    

23. val NEGATED: String

    

24. val NONE: String

    

25. val ORGAN: String

    

26. val OUTPUT: String

    

27. val PRECEDED_BY: String

    

28. val PTMLUT: Map[String, String]

    

29. val REGULATION: String

    

30. val SEEN: String

    

31. val SEEN_IN: String

    

32. val SEP: String

    

33. val SPECIES: String

    

34. val TISSUE_TYPE: String

    

35. val TRANSLOCATION: String

    

36. val TRANSLOCATION_DESTINATION: String

    

37. val TRANSLOCATION_SOURCE: String

    

38. val TRIGGERS: String

    

39. val UNKNOWN: String

    

40. val WHITESPACE: Regex

    

41. final def asInstanceOf[T0]: T0

    

    Definition Classes

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42. def clone(): AnyRef

    

    Attributes

    protected[java.lang]

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    @throws( ... )

43. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

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44. def equals(arg0: Any): Boolean

    

    Definition Classes

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45. def finalize(): Unit

    

    Attributes

    protected[java.lang]

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    Annotations

    @throws( classOf[java.lang.Throwable] )

46. final def getClass(): Class[_]

    

    Definition Classes

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47. def getEventLabel(e: EntityEventRepresentation): String

    

48. def getPTMrepresentation(ptm: PTM): String

    

49. def getSortedTriggers(mns: Seq[Mention]): String

    

50. def getTrigger(m: Mention): Option[String]

    

51. def hashCode(): Int

    

    Definition Classes

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52. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

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53. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

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54. final def notify(): Unit

    

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55. final def notifyAll(): Unit

    

    Definition Classes

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56. def resolveEvidence(m: Mention): CorefMention

    

57. final def synchronized[T0](arg0: ⇒ T0): T0

    

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58. def toString(): String

    

    Definition Classes

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59. def validateOutput(rowsForOutput: Seq[AssemblyRow]): Unit

    

    Validate the rows before writing

60. final def wait(): Unit

    

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    Annotations

    @throws( ... )

61. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

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    @throws( ... )

62. final def wait(arg0: Long): Unit

    

    Definition Classes

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    @throws( ... )