org.bdgenomics.adam.rdd.fragment
Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written.
Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written. True indicates to write the original qualities. The default is false.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair. Default is false (no suffixes).
Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.
Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.
GenomicRDD of Fragments. Used to get HadoopConfiguration.
Returns a new Interleaved FASTQ InFormatter.
InFormatter companion that creates an InFormatter that writes interleaved FASTQ.