inferredInsertSize

MateAlignmentProperties

isDuplicate

MappedRead PairedRead Read UnmappedRead

isFirstInPair

PairedRead

isMapped

MappedRead PairedRead Read UnmappedRead

isMateMapped

PairedRead

isPaired

MappedRead PairedRead Read UnmappedRead

isPositiveStrand

MappedRead MateAlignmentProperties