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–
deprecated
magic_rdds
org
org.hammerlab
org.hammerlab.genomics
org.hammerlab.genomics.readsets
(trait)
HasSampleId
(object)
(case class)
ReadSets
(object)
(class)
SampleRead
org.hammerlab.genomics.readsets.args
org.hammerlab.genomics.readsets.args.base
(trait)
Base
(trait)
HasReference
(trait)
InputArgs
(trait)
PrefixedPathsBase
org.hammerlab.genomics.readsets.args.impl
(trait)
Arguments
(trait)
NoSequenceDictionaryArgs
(trait)
PathPrefixArg
(trait)
PathsArgs
(trait)
PrefixedSingleSampleArgs
(trait)
ReferenceArgs
(trait)
SampleNamesArg
(class)
SingleSampleArgs
(trait)
SingleSampleArgsI
org.hammerlab.genomics.readsets.args.path
(case class)
PathPrefix
(class)
PathPrefixOptionHandler
(object)
(case class)
UnprefixedPath
(class)
UnprefixedPathHandler
(class)
UnprefixedPathOptionHandler
org.hammerlab.genomics.readsets.io
(object)
(case class)
Config
(object)
(trait)
Input
(trait)
ReadFilterArgs
(trait)
ReadFilters
(object)
(trait)
Sample
org.hammerlab.genomics.readsets.kryo
(class)
Registrar
org.hammerlab.genomics.readsets.rdd
(case class)
ReadsRDD