Class/Object

org.hammerlab.genomics.readsets

ReadSets

Related Docs: object ReadSets | package readsets

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case class ReadSets(readsRDDs: PerSample[ReadsRDD], sequenceDictionary: SequenceDictionary, contigLengths: ContigLengths) extends Product with Serializable

A ReadSets contains reads from multiple inputs as well as SequenceDictionary / contig-length information merged from them.

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. ReadSets
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Instance Constructors

  1. new ReadSets(readsRDDs: PerSample[ReadsRDD], sequenceDictionary: SequenceDictionary, contigLengths: ContigLengths)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. lazy val allMappedReads: RDD[MappedRead]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val contigLengths: ContigLengths

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  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def finalize(): Unit

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    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  12. lazy val mappedReadsRDDs: IndexedSeq[RDD[MappedRead]]

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  13. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  14. final def notify(): Unit

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    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  16. def numSamples: NumSamples

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  17. val readsRDDs: PerSample[ReadsRDD]

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  18. lazy val sampleIdxKeyedMappedReads: RDD[SampleRead]

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  19. def sampleNames: PerSample[String]

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  20. def samples: PerSample[Sample]

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  21. def sc: SparkContext

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  22. val sequenceDictionary: SequenceDictionary

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  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  24. final def wait(): Unit

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    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  26. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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