Package org.obolibrary.robot

Interface Summary

Interface	Description
Command	A simple interface for all ROBOT commands.

Class Summary

Class	Description
AnnotateCommand	Add and remove annotations from an ontology.
CommandLineHelper	Convenience methods for working with command line options.
CommandLineInterface	Entry point for ROBOT command-line interface.
CommandManager	Execute collections of commands.
CommandState	A simple state container for communicating between Commands.
ConvertCommand	Save ontology to a different format.
DiffCommand	A command to get the differences between two ontology files.
ExceptionHelper	Convenience class to handle formatting error messages and returning links to user support.
ExplainCommand	Handles inputs and outputs for the ExplainOperation.
ExportPrefixesCommand	Export prefixes to a file.
ExtendedPosixParser	A custom CommandLineParser that ignores unrecognized options without throwing an exeception.
ExtractCommand	Handles inputs and outputs for the ExtractOperation.
FilterCommand	Create a subset of an ontology based on a series of inputs.
MaterializeCommand	Handles inputs and outputs for the MaterializeOperation.
MergeCommand	Handles inputs and outputs for the MergeOperation.
MirrorCommand	Mirrors an ontology plus its imports closure locally.
QueryCommand	Handles inputs and outputs for the QueryOperation.
ReasonCommand	Handles inputs and outputs for the ReasonOperation.
ReduceCommand	Handles inputs and outputs for the ReduceOperation.
RelaxCommand	Handles inputs and outputs for the RelaxOperation.
RemoveCommand	Remove axioms from an ontology based on a series of inputs.
RenameCommand
RepairCommand	Handles inputs and outputs for the RepairOperation.
ReportCommand	Handles inputs and outputs for the ReportOperation.
TemplateCommand	Handles inputs and outputs for the TemplateOperation.
UnmergeCommand	Handles inputs and outputs for the UnmergeOperation.
ValidateProfileCommand
VerifyCommand	Command that runs a sparql query expecting zero results.