Package ome.xml.model

Class Project

java.lang.Object

ome.xml.model.AbstractOMEModelObject

ome.xml.model.Project

All Implemented Interfaces:

OMEModelObject

public class Project
extends AbstractOMEModelObject

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	NAMESPACE

Constructor Summary

Constructors

Constructor	Description
Project()	Default constructor.
Project(Project orig)	Copy constructor.
Project(org.w3c.dom.Element element, OMEModel model)	Constructs Project recursively from an XML DOM tree.

Method Summary

Modifier and Type	Method	Description
org.w3c.dom.Element	asXMLElement(org.w3c.dom.Document document)	Takes the entire object hierarchy and produces an XML DOM tree.
org.w3c.dom.Element	asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Project_element)	Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
java.util.List<Annotation>	copyLinkedAnnotationList()
java.util.List<Dataset>	copyLinkedDatasetList()
java.lang.String	getDescription()
java.lang.String	getID()
Annotation	getLinkedAnnotation(int index)
Dataset	getLinkedDataset(int index)
Experimenter	getLinkedExperimenter()
ExperimenterGroup	getLinkedExperimenterGroup()
java.lang.String	getName()
boolean	link(Reference reference, OMEModelObject o)	Link a given OME model object to this model object.
boolean	linkAnnotation(Annotation o)
boolean	linkDataset(Dataset o)
void	linkExperimenter(Experimenter o)
void	linkExperimenterGroup(ExperimenterGroup o)
void	setDescription(java.lang.String description)
void	setID(java.lang.String id)
Annotation	setLinkedAnnotation(int index, Annotation o)
Dataset	setLinkedDataset(int index, Dataset o)
void	setName(java.lang.String name)
int	sizeOfLinkedAnnotationList()
int	sizeOfLinkedDatasetList()
boolean	unlinkAnnotation(Annotation o)
boolean	unlinkDataset(Dataset o)
void	unlinkExperimenter(Experimenter o)
void	unlinkExperimenterGroup(ExperimenterGroup o)
void	update(org.w3c.dom.Element element, OMEModel model)	Updates Project recursively from an XML DOM tree.

Methods inherited from class ome.xml.model.AbstractOMEModelObject

getChildrenByTagName, stripNamespacePrefix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

NAMESPACE

public static final java.lang.String NAMESPACE

See Also:

Constant Field Values

Constructor Details

Project

public Project()

Default constructor.

Project

public Project(org.w3c.dom.Element element, OMEModel model) throws EnumerationException

Constructs Project recursively from an XML DOM tree.

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

Project

public Project(Project orig)

Copy constructor.

Method Details

update

public void update(org.w3c.dom.Element element, OMEModel model) throws EnumerationException

Updates Project recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.

Specified by:

update in interface OMEModelObject

Overrides:

update in class AbstractOMEModelObject

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

link

public boolean link(Reference reference, OMEModelObject o)

Description copied from interface: OMEModelObject

Link a given OME model object to this model object.

Specified by:

link in interface OMEModelObject

Overrides:

link in class AbstractOMEModelObject

Parameters:

reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.

o - Model object to link to.

Returns:

true if this model object was able to handle the reference, false otherwise.

getName

public java.lang.String getName()

setName

public void setName(java.lang.String name)

getID

public java.lang.String getID()

setID

public void setID(java.lang.String id)

getDescription

public java.lang.String getDescription()

setDescription

public void setDescription(java.lang.String description)

getLinkedExperimenter

public Experimenter getLinkedExperimenter()

linkExperimenter

public void linkExperimenter(Experimenter o)

unlinkExperimenter

public void unlinkExperimenter(Experimenter o)

getLinkedExperimenterGroup

public ExperimenterGroup getLinkedExperimenterGroup()

linkExperimenterGroup

public void linkExperimenterGroup(ExperimenterGroup o)

unlinkExperimenterGroup

public void unlinkExperimenterGroup(ExperimenterGroup o)

sizeOfLinkedDatasetList

public int sizeOfLinkedDatasetList()

copyLinkedDatasetList

public java.util.List<Dataset> copyLinkedDatasetList()

getLinkedDataset

public Dataset getLinkedDataset(int index)

setLinkedDataset

public Dataset setLinkedDataset(int index, Dataset o)

linkDataset

public boolean linkDataset(Dataset o)

unlinkDataset

public boolean unlinkDataset(Dataset o)

sizeOfLinkedAnnotationList

public int sizeOfLinkedAnnotationList()

copyLinkedAnnotationList

public java.util.List<Annotation> copyLinkedAnnotationList()

getLinkedAnnotation

public Annotation getLinkedAnnotation(int index)

setLinkedAnnotation

public Annotation setLinkedAnnotation(int index, Annotation o)

linkAnnotation

public boolean linkAnnotation(Annotation o)

unlinkAnnotation

public boolean unlinkAnnotation(Annotation o)

asXMLElement

public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document)

Description copied from interface: OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

Specified by:

asXMLElement in interface OMEModelObject

Specified by:

asXMLElement in class AbstractOMEModelObject

Parameters:

document - Destination document for element creation, etc.

Returns:

XML DOM tree root element for this model object.

asXMLElement

public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Project_element)

Description copied from class: AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

Overrides:

asXMLElement in class AbstractOMEModelObject

Parameters:

document - Destination document for element creation, etc.

Project_element - Element from the subclass. If null a new element will be created of this class.

Returns:

element populated with properties from this class.