Package ome.xml.model
Class Screen
java.lang.Object
ome.xml.model.AbstractOMEModelObject
ome.xml.model.Screen
- All Implemented Interfaces:
OMEModelObject
public class Screen extends AbstractOMEModelObject
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
NAMESPACE
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Constructor Summary
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Method Summary
Modifier and Type Method Description void
addReagent(Reagent reagent)
org.w3c.dom.Element
asXMLElement(org.w3c.dom.Document document)
Takes the entire object hierarchy and produces an XML DOM tree.org.w3c.dom.Element
asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Screen_element)
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.java.util.List<Annotation>
copyLinkedAnnotationList()
java.util.List<Plate>
copyLinkedPlateList()
java.util.List<Reagent>
copyReagentList()
java.lang.String
getDescription()
java.lang.String
getID()
Annotation
getLinkedAnnotation(int index)
Plate
getLinkedPlate(int index)
java.lang.String
getName()
java.lang.String
getProtocolDescription()
java.lang.String
getProtocolIdentifier()
Reagent
getReagent(int index)
java.lang.String
getReagentSetDescription()
java.lang.String
getReagentSetIdentifier()
java.lang.String
getType()
boolean
link(Reference reference, OMEModelObject o)
Link a given OME model object to this model object.boolean
linkAnnotation(Annotation o)
boolean
linkPlate(Plate o)
void
removeReagent(Reagent reagent)
void
setDescription(java.lang.String description)
void
setID(java.lang.String id)
Annotation
setLinkedAnnotation(int index, Annotation o)
Plate
setLinkedPlate(int index, Plate o)
void
setName(java.lang.String name)
void
setProtocolDescription(java.lang.String protocolDescription)
void
setProtocolIdentifier(java.lang.String protocolIdentifier)
Reagent
setReagent(int index, Reagent reagent)
void
setReagentSetDescription(java.lang.String reagentSetDescription)
void
setReagentSetIdentifier(java.lang.String reagentSetIdentifier)
void
setType(java.lang.String type)
int
sizeOfLinkedAnnotationList()
int
sizeOfLinkedPlateList()
int
sizeOfReagentList()
boolean
unlinkAnnotation(Annotation o)
boolean
unlinkPlate(Plate o)
void
update(org.w3c.dom.Element element, OMEModel model)
Updates Screen recursively from an XML DOM tree.Methods inherited from class ome.xml.model.AbstractOMEModelObject
getChildrenByTagName, stripNamespacePrefix
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Field Details
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NAMESPACE
public static final java.lang.String NAMESPACE- See Also:
- Constant Field Values
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Constructor Details
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Screen
public Screen()Default constructor. -
Screen
Constructs Screen recursively from an XML DOM tree.- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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Screen
Copy constructor.
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Method Details
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update
Updates Screen recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.- Specified by:
update
in interfaceOMEModelObject
- Overrides:
update
in classAbstractOMEModelObject
- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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link
Description copied from interface:OMEModelObject
Link a given OME model object to this model object.- Specified by:
link
in interfaceOMEModelObject
- Overrides:
link
in classAbstractOMEModelObject
- Parameters:
reference
- The type qualifier for the reference. This should be the corresponding reference type foro
. If, for example,o
is of typeImage
,reference
MUST be of typeImageRef
.o
- Model object to link to.- Returns:
true
if this model object was able to handle the reference,false
otherwise.
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getID
public java.lang.String getID() -
setID
public void setID(java.lang.String id) -
getName
public java.lang.String getName() -
setName
public void setName(java.lang.String name) -
getProtocolIdentifier
public java.lang.String getProtocolIdentifier() -
setProtocolIdentifier
public void setProtocolIdentifier(java.lang.String protocolIdentifier) -
getProtocolDescription
public java.lang.String getProtocolDescription() -
setProtocolDescription
public void setProtocolDescription(java.lang.String protocolDescription) -
getReagentSetDescription
public java.lang.String getReagentSetDescription() -
setReagentSetDescription
public void setReagentSetDescription(java.lang.String reagentSetDescription) -
getReagentSetIdentifier
public java.lang.String getReagentSetIdentifier() -
setReagentSetIdentifier
public void setReagentSetIdentifier(java.lang.String reagentSetIdentifier) -
getType
public java.lang.String getType() -
setType
public void setType(java.lang.String type) -
getDescription
public java.lang.String getDescription() -
setDescription
public void setDescription(java.lang.String description) -
sizeOfReagentList
public int sizeOfReagentList() -
copyReagentList
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getReagent
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setReagent
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addReagent
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removeReagent
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sizeOfLinkedPlateList
public int sizeOfLinkedPlateList() -
copyLinkedPlateList
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getLinkedPlate
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setLinkedPlate
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linkPlate
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unlinkPlate
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sizeOfLinkedAnnotationList
public int sizeOfLinkedAnnotationList() -
copyLinkedAnnotationList
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getLinkedAnnotation
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setLinkedAnnotation
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linkAnnotation
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unlinkAnnotation
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asXMLElement
public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document)Description copied from interface:OMEModelObject
Takes the entire object hierarchy and produces an XML DOM tree.- Specified by:
asXMLElement
in interfaceOMEModelObject
- Specified by:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.- Returns:
- XML DOM tree root element for this model object.
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asXMLElement
public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Screen_element)Description copied from class:AbstractOMEModelObject
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.- Overrides:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.Screen_element
- Element from the subclass. Ifnull
a new element will be created of this class.- Returns:
element
populated with properties from this class.
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