Package ome.xml.model
Class Well
java.lang.Object
ome.xml.model.AbstractOMEModelObject
ome.xml.model.Well
- All Implemented Interfaces:
OMEModelObject
public class Well extends AbstractOMEModelObject
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
NAMESPACE
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Constructor Summary
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Method Summary
Modifier and Type Method Description void
addWellSample(WellSample wellSample)
org.w3c.dom.Element
asXMLElement(org.w3c.dom.Document document)
Takes the entire object hierarchy and produces an XML DOM tree.org.w3c.dom.Element
asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Well_element)
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.java.util.List<Annotation>
copyLinkedAnnotationList()
java.util.List<WellSample>
copyWellSampleList()
Color
getColor()
NonNegativeInteger
getColumn()
java.lang.String
getExternalDescription()
java.lang.String
getExternalIdentifier()
java.lang.String
getID()
Annotation
getLinkedAnnotation(int index)
Reagent
getLinkedReagent()
Plate
getPlate()
NonNegativeInteger
getRow()
java.lang.String
getType()
WellSample
getWellSample(int index)
boolean
link(Reference reference, OMEModelObject o)
Link a given OME model object to this model object.boolean
linkAnnotation(Annotation o)
void
linkReagent(Reagent o)
void
removeWellSample(WellSample wellSample)
void
setColor(Color color)
void
setColumn(NonNegativeInteger column)
void
setExternalDescription(java.lang.String externalDescription)
void
setExternalIdentifier(java.lang.String externalIdentifier)
void
setID(java.lang.String id)
Annotation
setLinkedAnnotation(int index, Annotation o)
void
setPlate(Plate plate_BackReference)
void
setRow(NonNegativeInteger row)
void
setType(java.lang.String type)
WellSample
setWellSample(int index, WellSample wellSample)
int
sizeOfLinkedAnnotationList()
int
sizeOfWellSampleList()
boolean
unlinkAnnotation(Annotation o)
void
unlinkReagent(Reagent o)
void
update(org.w3c.dom.Element element, OMEModel model)
Updates Well recursively from an XML DOM tree.Methods inherited from class ome.xml.model.AbstractOMEModelObject
getChildrenByTagName, stripNamespacePrefix
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Field Details
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NAMESPACE
public static final java.lang.String NAMESPACE- See Also:
- Constant Field Values
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Constructor Details
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Well
public Well()Default constructor. -
Well
Constructs Well recursively from an XML DOM tree.- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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Well
Copy constructor.
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Method Details
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update
Updates Well recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.- Specified by:
update
in interfaceOMEModelObject
- Overrides:
update
in classAbstractOMEModelObject
- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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link
Description copied from interface:OMEModelObject
Link a given OME model object to this model object.- Specified by:
link
in interfaceOMEModelObject
- Overrides:
link
in classAbstractOMEModelObject
- Parameters:
reference
- The type qualifier for the reference. This should be the corresponding reference type foro
. If, for example,o
is of typeImage
,reference
MUST be of typeImageRef
.o
- Model object to link to.- Returns:
true
if this model object was able to handle the reference,false
otherwise.
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getID
public java.lang.String getID() -
setID
public void setID(java.lang.String id) -
getColumn
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setColumn
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getRow
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setRow
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getExternalDescription
public java.lang.String getExternalDescription() -
setExternalDescription
public void setExternalDescription(java.lang.String externalDescription) -
getExternalIdentifier
public java.lang.String getExternalIdentifier() -
setExternalIdentifier
public void setExternalIdentifier(java.lang.String externalIdentifier) -
getType
public java.lang.String getType() -
setType
public void setType(java.lang.String type) -
getColor
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setColor
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sizeOfWellSampleList
public int sizeOfWellSampleList() -
copyWellSampleList
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getWellSample
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setWellSample
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addWellSample
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removeWellSample
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getLinkedReagent
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linkReagent
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unlinkReagent
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sizeOfLinkedAnnotationList
public int sizeOfLinkedAnnotationList() -
copyLinkedAnnotationList
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getLinkedAnnotation
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setLinkedAnnotation
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linkAnnotation
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unlinkAnnotation
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getPlate
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setPlate
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asXMLElement
public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document)Description copied from interface:OMEModelObject
Takes the entire object hierarchy and produces an XML DOM tree.- Specified by:
asXMLElement
in interfaceOMEModelObject
- Specified by:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.- Returns:
- XML DOM tree root element for this model object.
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asXMLElement
public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element Well_element)Description copied from class:AbstractOMEModelObject
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.- Overrides:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.Well_element
- Element from the subclass. Ifnull
a new element will be created of this class.- Returns:
element
populated with properties from this class.
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