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App.about() instead.
App implementations.BasicDetails implementations.ConsoleArgument implementations.ConsolePane implementations.Contextual objects.Converter plugins.ConvertService implementations.DataHandle plugins.Display implementations.DragAndDropData implementations.DragAndDropHandlers.Gateway implementations.HandlerPlugin implementations.HandlerServices.InputHarvesters.InputHarvester that implements the
PreprocessorPlugin interface.InputPanel implementations.IOPlugins.Location implementations.LogService.Module implementations.ModuleInfo implementation.ModuleItem implementations.PrefService implementation.PTServices.RichPlugin implementations.ScriptContext for use in the
AbstractScriptEngine.ScriptHeader implementations.ScriptLanguage implementations.Service implementations.PreprocessorPlugin implementations that
populate singleton inputs.SingletonServices.TextFormat implementations.Tool implementations.TypedPlugins.TypedServices.UIDetails implementations.InputWidget implementations that
belong to a specific UI.UserInterface implementations.WrapperPlugins.WrapperServices.KeyCode plus
InputModifiers.Display when there is one single unresolved
Display parameter.ScriptLanguage implementations which adapt an
existing ScriptEngineFactory.AdaptedScriptLanguage wrapping the given
ScriptEngineFactory.
AdaptedScriptLanguage wrapping the
ScriptEngineFactory with the given name.
stdout or stderr.
AppService.AppService and App instead.UIDetails.APPLICATION_MENU_ROOT instead.
PrimitiveArray instances.Plugin annotation.boolean elements.InputPanel with widgets corresponding to the
given Module instance.
byte elements.bytes
and byte arrays.Location backed by a ByteBuffer.Annotation : AnnotatedObject pairs.
ConversionUtils.canCast(Class, Class)
ConversionUtils.canCast(Object, Class)
CommandModule.preview() calls.
ConversionRequest.sourceClass() to its
ConversionRequest.destClass() or
ConversionRequest.destType().
Converter.canConvert(Object, Type)
Converter.canConvert(Object, Class)
ConversionUtils.canConvert(Class, Class)
ConversionUtils.canConvert(Object, Class)
ConversionUtils.cast(Object, Class)
char elements.IllegalArgumentException if (data, display) pair is
incompatible.
Class objects and primitive types.CodeGenerator for Java.ColorRGB objects and related utility methods.AnnotationCombiner.combine(File)
instead.
AnnotationCombiner instead.AnnotationCombiner.AnnotationCombiner()
instead.
Command is a plugin that is executable.Command.PluginInfo.
Command instance.PluginInfo.
CommandInfo, around the
specified Command instance.
ModuleItem implementation describing an input or output of a command.Prioritized objects.
Class objects using their fully qualified names.
stdout and stderr console output.Converter and ConvertService
methods.Converter.convert(Object, Class) but capable of creating and populating
multi-element objects (Collections and array types).
ConversionRequest.sourceObject() to the
specified ConversionRequest.destClass() or
ConversionRequest.destType().
ConversionUtils.convert(Object, Class)
DragAndDropData to the type of data object
supported by this handler.
Plugin for converting between classes and
types.Converter.InputPanel.
WidgetModel for the given module input.
Location.InputStream backed by a DataHandle.DataHandle.
OutputStream backed by a DataHandle.DataHandle.
DataHandles.AppService and App instead.Commands.Converter implementation.ConvertService implementation.DataHandleService.Displays.DragAndDropData, which provides a
UI-agnostic way to bundle an object together with its MIME type.EventService implementation for SciJava.InputService.IOService.MutableModule implementation, intended for subclassing.MutableModuleInfo implementation.MutableModuleItem implementation, for use with custom
MutableModule implementations.PrefService implementation, which persists preferences to
disk using the Java Preferences API.ScriptHeaderService implementation.ScriptInterpreter.DefaultScriptInterpreter.
InputWidget.InputWidgets.PluginFinder to this
index, or does nothing if the attached PluginFinder is null.
Display.Display.Displays.DisplayPanel.AbstractUIInputWidget.refreshWidget() operation.
double elements.Display.
DragAndDropData, using the first available compatible handler.
Display.
Display.
DynamicCommand's associated
ModuleInfo.SciJavaEvent, without saving the event
itself (since doing so could leave dangling references).DataHandle for a FileLocation.Location backed by a File on disk.File using a UI prompt.float elements.LineOutputStream.println(String), stripping any trailing new-line characters.
double value into an array of eight bytes.
double values into an array of byte
values.
float value into an array of four bytes.
float values into an array of byte
values.
ColorRGB object.
int value into an array of four bytes.
int values into an array of byte
values.
long value into an array of eight bytes.
long values into an array of byte
values.
short value into an array of two bytes.
short values into an array of byte
values.
Context to provide
one-line access to a suite of Services.Gateway.Type objects, particularly generic
types.Service, if it exists in
the underlying Context.
Service with the given class name,
if it exists in the underlying Context.
KeyCode.UNDEFINED if no such code.
KeyCode.UNDEFINED if no such
code.
Fields marked with the annotation of the
specified class.
Fields marked with the annotation of the
specified class.
Methods marked with the annotation of the
specified class.
Methods marked with the annotation of the
specified class.
Plugin annotation.
AnnotationCombiner.getAnnotationFiles() instead.
artifactId of the application.
ByteBuffer.
GenericUtils.getClass(Type)
Class of the objects that can
be created.
Commands).
Commands corresponding to the given plugins.
attrs = { @Attr(name = "app-command") }
Commands of the given type.
GenericUtils.getComponentClass(Type)
Contextual.setContext(Context) has not yet been called on this object.
ModuleItem.
ImageDisplay.class).
ImageDisplay.class).
Display.
ScriptEngine.
PluginIndex.discover().
File.
GenericUtils.getFieldType(Field, Class)
groupId of the application.
ConvertService.getHandler(Object, Class)
ConvertService.getHandler(Object, Type)
DragAndDropData dragged onto the specified display.
ScriptHeaders capable of handling the given
ScriptLanguage and combines the result of their
ScriptHeader.getHeader() output to a single string.
MenuEntry.
ModuleInfo to which this item belongs.
PluginInfo metadata associated with the object.
Field corresponding to the given @Parameter
annotated module input, or null if the input does not exist or was not
declared using the @Parameter mechanism.
ScriptLanguage.
ScriptEngineFactory instances available from the Java scripting
framework itself.
GenericUtils.getFieldClasses(Field, Class), but with respect to the return
type of the given Method rather than a Field.
GenericUtils.getFieldType(Field, Class), but with respect to the return
type of the given Method rather than a Field.
Date of the file's last modification.
ModuleInfo.
c, which is
lower priority than the ref service.
ConversionUtils.getNonprimitiveType(Class)
Class closest to the given type.
ConversionUtils.getNullValue(Class)
IOPlugin for opening data from the given
source.
Field corresponding to the given @Parameter
annotated module output, or null if the output does not exist or was not
declared using the @Parameter mechanism.
Class of the item objects, if that class has already
been loaded.
Service).
@Plugin annotation (i.e., Plugin.type()).
c, which is
higher priority than the ref service.
IOPlugin for saving data to the given
destination.
ScriptInfo metadata for the script at the given file, or
null if none.
ModuleItem if found, or null if
not exactly one unresolved fillable input of that type.
ModuleItem if found, or null if not exactly
one unresolved output of that type.
ThreadService.ThreadContext of the given thread.
nth type parameter of the specified class.
GenericUtils.getFieldClasses(Field, Class)
URI, or null if the location
cannot be expressed as such.
URI, or null if this URL is not formatted
strictly according to to RFC2396 and cannot be converted to a URI.
URL.
SNAPSHOT version.
SNAPSHOT version.
SNAPSHOT version.
groupId and artifactId are
null.
HandlerPlugins of a particular type.PluginInfo metadata.CustomDrawnTools use IconDrawers to draw their icon on
screen.IconService allows a Tool to obtain the IconDrawer.Module input values, according to the
following steps:
Create an InputPanel with widgets corresponding to the module
inputs.
Present the panel, if in a UI context.
Harvest the final widget values from the panel, updating the
Module's input values to match the harvested values.
Perform any other needed processing of the results (marking inputs as
resolved, storing persisted values to preferences, etc.).
AbstractModuleInfo.outputMap, initializing if needed.
AbstractModuleInfo.inputMap, initializing if needed.
Instantiable cannot create an object.int elements.Command) which is intended to be run
interactively.Boolean or
boolean).
Character or
char).
Context.
ThreadService.invoke(java.lang.Runnable) and ThreadService.queue(java.lang.Runnable).
int, float
or any Number implementation.
stderr.
stdout.
String,
Character or char.
Iterator.
N last-recently-used items.OutputStream.Lists.PrefService for the given
ModuleItem.
Instantiable.createInstance().
ClassLoader, or null if it cannot be loaded.
long elements.AnnotationCombiner.main(String[])
instead.
byte array to the appropriate 1D primitive type array.
byte array to the appropriate 2D primitive type array.
FileUtils.stripFilenameVersion(String)
Plugin's menu path.ShadowMenu structure
into a menu for a particular user interface.MenuPath.MenuService's
ShadowMenu.UIDetails.MenuService's ShadowMenu.MenuService's ShadowMenu.MenuService's ShadowMenu.Method, which can be invoked at will.Module execution has been canceled.Module directly (rather than using the
CommandModule adapter class).Module.Module
(but not a specific instance of it).ModulePostprocessor has been invoked as part of
a module execution.Module.ModulePreprocessor has been invoked as part of
a module execution.Module.ModuleProcessor has been invoked as part of a
module execution.ModulePreprocessor) or
following (see ModulePostprocessor) the module execution.Module, including pre- and
post-processing and event notification.ModuleService.ModuleService.ModuleService.MultiOutputStream is a collection of constituent
OutputStream objects, to which all output is forwarded.PrintStream that wraps a MultiOutputStream.Module extension allowing manipulation of its metadata.ModuleInfo extension allowing manipulation of its metadata.ModuleItem extension allowing manipulation of its metadata.float array so that the minimum value maps to
0.0 and the maximum value maps to 1.0.
double array so that the minimum value maps to
0.0 and the maximum value maps to 1.0.
Gateway cannot obtain a
Service.stdout or stderr.
Context is null, but shouldn't be.Converter implementation for handling null values.Number objects.Object elements.ObjectService.ObjectService.ObjectService.--open command line argument.OptionsPlugin has changed an option.stdout or stderr.AbstractModuleInfo.outputList, initializing if needed.
stdout or stderr.AbstractModuleInfo.inputList, initializing if needed.
stdout or stderr.
DefaultPluginFinder to
discover plugins.
PluginFinder to
discover plugins.
PluginService.PluginService.PluginService.ModulePostprocessors.
Module.App.prefs() instead.
PrefServiceService for storing and retrieving arbitrary preferences.ModulePreprocessors.
Module.Command) whose results can be previewed.ArrayList, but more performant.SciJavaPlugin.App.quit() instead.
buf.remaining() bytes of data from the stream into a
ByteBuffer.
len bytes of data from the stream into a
ByteBuffer.
InputStream and either accumulates the read bytes
in a String or outputs to a PrintStream.ReflectedUniverse.stdout or stderr.
Contextual, Prioritized plugins that
retain access to their associated PluginInfo metadata via the
HasPluginInfo interface.--run command line argument.Integer.MAX_VALUE).
Long.MAX_VALUE).
ModuleItem using the
PrefService.
Services.HandlerService capable of mapping
ScriptLanguages to ScriptHeaders.Reader.
IOPlugin for scripts.Module which executes a script.List of those classes.
Service information from all JAR files on the classpath.Service.Context finishes initializing all its
services.ConvertService to use for handling conversion requests.
PrefService
PluginInfo metadata associated with the object.
ModuleInfo.
Class of the item objects.
ConversionRequest.
ShadowMenu hierarchies.short elements.Display for the given object, and shows it using an
appropriate UI widget of the default user interface.
Display for the given object, and shows it using an
appropriate UI widget of the default user interface.
Display using an appropriate UI widget
of the default user interface.
SingletonPlugins of a particular type.ArrayList whose size can be adjusted more efficiently.n bytes of data from the stream.
AbstractRichPlugin instead.LogService using the standard error stream.Strings of key/value pairs.Strings.EventHandler annotated
methods.
ConvertService.supports(Object, Class)
ConvertService.supports(Object, Type)
DragAndDropData can be dropped onto the
specified display.
DragAndDropData onto a compatible display.
DragAndDropData onto the specified display.
Display.
Displays.Strings.TextFormat is a plugin that provides handling for a text markup
language.IOPlugin for text conversion to HTML.Collection implementation.
len bytes of a byte array beyond
the given offset to a double.
byte array beyond the given
offset to a double.
byte array to a
double.
len bytes of a byte array beyond
the given offset to a double.
byte array beyond the given
offset to a double.
byte array to a
double.
len bytes of a byte array beyond
the given offset to a float.
byte array beyond a given
offset to a float.
byte array to a
float.
len bytes of a byte array beyond
a given offset to a float.
byte array beyond a given
offset to a float.
byte array to a
float.
len bytes of a byte array beyond
the given offset to an int.
byte array beyond the given
offset to an int.
byte array to an
int.
len bytes of a byte array beyond
the given offset to an int.
byte array beyond the given
offset to an int.
byte array to an
int.
len bytes of a byte array beyond
the given offset to a long.
byte array beyond the given
offset to a long.
byte array to a
long.
len bytes of a byte array beyond
the given offset to a long.
byte array beyond the given
offset to a long.
byte array to a
long.
Number of the specified type, or
null if the types are incompatible.
len bytes of a byte array beyond
the given offset to a short.
byte array beyond the given
offset to a short.
byte array to a
short.
len bytes of a byte array beyond
the given offset to a short.
byte array beyond the given
offset to a short.
byte array to a
short.
String unless a PrintStream was
specified in the constructor.
Class), which can be queried
at runtime.Class).TypedPlugin.--ui command line argument.UserInterface.UserInterface
inputs with the UIService's default UI instance, if compatible.nBytes of the given long and places the result
in the given byte array.
Location backed by a URI string.Location backed by a URL.URL to its corresponding File.
File.
Validated
object.Class objects.SciJavaEvent indicating the first time an application is
run.InputWidget.InputWidgets.WrapperPlugins of a particular type.buf.remaining() bytes of data from the given
ByteBuffer to the stream.
LineOutputStream.flush() the
current line if it is a new-line character.
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